English
Contact
AVIDa-hTNFa image

Photo by Unsplash

Datasets

AVIDa-hTNFa

AVIDa-hTNFa is an antigen-antibody interaction dataset produced from two alpacas immunized with human tumor necrosis factor alpha (TNFa) protein. This dataset includes labels indicating whether the VHH sequences are binders or non-binders to the wild type TNFa protein.

Open HuggingFace

Columns

A description of columns in the dataset CSV file.

AVIDa-hTNFa.csv

Column
Description
VHH_sequence
Amino acid sequence of VHH
Ag_label
Antigen Type
label
Binary label represented by 1 for the binding pair and 0 for the non-binding pair
subject_species
Species of the subject from which VHH was collected
subject_name
Name of the subject from which VHH was collected
subject_sex
Sex of the subject from which VHH was collected

antigen_sequences.csv

Column
Description
Ag_label
Antigen Type
Ag_sequence
Amino acid sequence of antigen

corpus-hTNFa.csv

Column
Description
VHH_sequence
Amino acid sequence of VHH
subject_species
Species of the subject from which VHH was collected
subject_name
Name of the subject from which VHH was collected
subject_sex
Sex of the subject from which VHH was collected

Metadata

The metadata of the subjects and antigen types are as follows.

Subjects

Two alpacas were used for dataset generation.

Name
Species
Sex
Happy
Alpaca
Male
Jessica
Alpaca
Female

License

This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.

Image

If you want to use the dataset for commercial purposes, please contact [email protected].

Disclaimer

  1. Unless otherwise separately undertaken by the Licensor, to the extent possible, the Licensor offers the Licensed Material as-is and as-available, and makes no representations or warranties of any kind concerning the Licensed Material, whether express, implied, statutory, or other. This includes, without limitation, warranties of title, merchantability, fitness for a particular purpose, non-infringement, absence of latent or other defects, accuracy, or the presence or absence of errors, whether or not known or discoverable. Where disclaimers of warranties are not allowed in full or in part, this disclaimer may not apply to You.
  2. To the extent possible, in no event will the Licensor be liable to You on any legal theory (including, without limitation, negligence) or otherwise for any direct, special, indirect, incidental, consequential, punitive, exemplary, or other losses, costs, expenses, or damages arising out of this Public License or use of the Licensed Material, even if the Licensor has been advised of the possibility of such losses, costs, expenses, or damages. Where a limitation of liability is not allowed in full or in part, this limitation may not apply to You.
  3. The disclaimer of warranties and limitation of liability provided above shall be interpreted in a manner that, to the extent possible, most closely approximates an absolute disclaimer and waiver of all liability.
Creative Commons Attribution-NonCommercial 4.0 International License. Section 5 – Disclaimer of Warranties and Limitation of Liability.
https://creativecommons.org/licenses/by-nc/4.0/legalcode